PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000180683
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 373aa    MW: 42023.4 Da    PI: 9.1669
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000180683genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.14.1e-5481361128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                    lppGfrFhPtdeel+ +yL kkv++++l++ ++i+evdiyk++Pw+Lp+k++ +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk++++  
  MDP0000180683   8 LPPGFRFHPTDEELILHYLIKKVASTPLPV-SIIAEVDIYKFDPWELPAKAAFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKTIVAPs 102
                    79****************************.89***************988899***************************************998 PP

            NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     ++++vg+kk Lvfykgr pkg kt+W+mheyrl
  MDP0000180683 103 gGRQNVGVKKALVFYKGRPPKGIKTNWIMHEYRL 136
                    88889***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.29E-646173IPR003441NAC domain
PROSITE profilePS5100562.0698173IPR003441NAC domain
PfamPF023653.8E-279136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MKNPESRLPP GFRFHPTDEE LILHYLIKKV ASTPLPVSII AEVDIYKFDP WELPAKAAFG  60
EKEWYFFSPR DRKYPNGARP NRAAASGYWK ATGTDKTIVA PSGGRQNVGV KKALVFYKGR  120
PPKGIKTNWI MHEYRLPESP NNYTTTTNHH RAVKLNDLSM RLDDWVLCRI YKKSNVVTSA  180
AALPNDQDQD VQGEEDFLHD ILLPSLKSPF PSLDHNMMST STTSSLKPQK SCSFSNLLDA  240
MDYSLLTSIL ADGQYYIPTG TGLQSTTPNK FSYSCTGSTS TGLDPQPLFN TNISSNRSHL  300
FQTLPQYNCL NLPSSAPNTE NRLKRQHSIT DDRGMLLYPS KKDVNSNCSF TNTANSFLNQ  360
QLLLSNPRFH FQE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-71517512170Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.144060.0fruit| leaf| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00333DAPTransfer from AT3G04070Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1981150.0KF198115.1 Malus hupehensis NAC domain protein (NAC24) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001280963.10.0NAC transcription factor 29
SwissprotA0SPJ65e-89NAMB2_TRITD; NAC transcription factor NAM-B2
TrEMBLS5RDR30.0S5RDR3_9R
STRINGPOPTR_0019s04690.11e-130(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66212750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.14e-98NAC domain containing protein 47